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- Data for Summary Analyses [1%] by balkenhol, 2011-01-25 06:46
- Contains data files to calculate summary statistics / models from the various output we got from CDPOP and the Mantel analyses.
- Converted IBD Data - June 2010 [1%] by balkenhol, 2010-06-15 02:34
- These are the IBD results from Erin, converted into different formats. I've only included files from generation 400, and only from batches 1-5 for now...file ...
- Re: Software packages for Mantel's tests and significance testing [1%] by balkenhol, 2010-04-07 02:59
- The problem is that most programs do not explicitly state how they do the randomization. Also, there are actually several ways for permuting ...
- Re: Overlap? [1%] by balkenhol, 2009-03-19 14:10
- Yes, we need to check on that. I compare it to the Schwartz & McKelvey paper to make the point that simulation results depend on their underlying ...
- Re: False discovery rate [1%] by balkenhol, 2009-03-17 08:12
- 2nd try: http://www.math.tau.ac.il/~ybenja/MyPapers/benjamini_hochberg1995.pdf ...
- Re: False discovery rate [1%] by balkenhol, 2009-03-16 19:47
- Sorry - looks like the links to the two FDR papers aren't working properly :O(
- Re: False discovery rate [1%] by balkenhol, 2009-03-16 19:46
- On second thought: If you include FDR, you should perhaps also cover (sequential) Bonferroni correction. I’m a little confused about the separation ...
- pop size & genetic differentiation [1%] by balkenhol, 2009-03-16 19:44
- Hi Rolf, You might already point it out, but effective population size can also influence neutral genetic differentiation, not just neutral genetic ...
- Re: Link to lecture 9 [1%] by balkenhol, 2009-03-16 19:41
- Hi Helene, This lecture looks awesome – I especially like the mix of theoretic practical considerations (software etc.). When you mention ...
- additional citations [1%] by balkenhol, 2009-03-16 19:40
- Hi Stephanie, Your lecture looks great! I only have a couple of minor suggestions: You might want to point out some more that edge ...
- Re: False discovery rate [1%] by balkenhol, 2009-03-16 17:23
- I'm not sure which FDR papers Stephanie has in mind, but here are 2 of the main FDR references I'm aware of: Benjamini Y, Hochberg Y (1995) "Controlling ...
- Re: random vs. IBD [1%] by balkenhol, 2009-03-16 17:09
- I'm think I agree with both of you. IBD-like patterns can arise from purely spatial influences on gene flow, but also from environmental heterogeneity. ...
- Re: Link to lecture 6 [1%] by balkenhol, 2009-03-16 16:40
- Hi Melanie, Yes, we'll actually use the "panmictic" scenario as a null in our lab, but that's probably not clear yet. Thanks for pointing it out... ...
- Re: Simulations for theoretical expectations [1%] by balkenhol, 2009-03-16 16:38
- Excellent point - the Epperson stuff covers this a little bit, but the OIKOS study is even better...I'll think about including it!