phylogeny subgroup

phylogeny of 10 angiosperms — by milligan — last modified Nov 19, 2010 10:05 AM

This tree was created with Neighbor Joining in MEGA using a Kimura 2-Parameter model, complete deletion, and 1000 bootstrap iterations. Numbers represent branch lengths. The gene used was the rbcL, and these were trimmed to ~600bp in the first half of the rbcL gene corresponding to coverage for all 11 species in the alignment (10 plants + 1 algal outgroup sequence).

pairwise path lengths for 10 angiosperms — by milligan — last modified Nov 19, 2010 10:08 AM

These distances were calculated from the NJ tree (phylogeny of 10 angiosperms). The distances represent the cumulative branch length from one species to another.

example AMF treefiles — by milligan — last modified Nov 19, 2010 09:44 AM

 

example AMF tree plots — by milligan — last modified Nov 19, 2010 09:45 AM

 

Eta description — by milligan — last modified Nov 19, 2010 09:46 AM

 

some R tools — by milligan — last modified Nov 19, 2010 09:47 AM

 

phylogenetics analysis tutorial — by milligan — last modified Nov 19, 2010 09:50 AM

 

sequence data for 10 angiosperms — by milligan — last modified Nov 19, 2010 09:51 AM

 

Asteraceae phylogeny — by milligan — last modified Nov 19, 2010 10:07 AM

This is a Newick-format tree for the Asteraceae. Branch lengths are in units of time. Source: Torices (2010).

Torices (2010) Asteraceae phylogeny — by milligan — last modified Nov 19, 2010 10:08 AM

 

try this folder — by piculell — last modified Nov 21, 2010 01:58 PM